Package: twomodeclusteringGA 1.0.0

twomodeclusteringGA: Genetic Algorithm Based Two-Mode Clustering

Implements two-mode clustering (biclustering) using genetic algorithms. The method was first introduced in Hageman et al. (2008) <doi:10.1007/s11306-008-0105-7>. The package provides tools for fitting, visualization, and validation of two-mode cluster structures in data matrices.

Authors:Jos Hageman [aut, cre]

twomodeclusteringGA_1.0.0.tar.gz
twomodeclusteringGA_1.0.0.zip(r-4.7-any)twomodeclusteringGA_1.0.0.zip(r-4.6-any)twomodeclusteringGA_1.0.0.zip(r-4.5-any)
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twomodeclusteringGA_1.0.0.tar.gz(r-4.7-any)twomodeclusteringGA_1.0.0.tar.gz(r-4.6-any)
twomodeclusteringGA_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
twomodeclusteringGA/json (API)

# Install 'twomodeclusteringGA' in R:

install.packages('twomodeclusteringGA', repos = c('https://joshageman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/joshageman/twomodeclusteringga/issues

Datasets:

twomodeToy - Toy matrix with one multiplicative and one additive bicluster

On CRAN:

3.18 score 1 stars 370 downloads 9 exports 24 dependencies

Last updated from:9a89183606. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	136
source / vignettes	OK	196
linux-release-x86_64	OK	134
macos-release-arm64	OK	98
macos-oldrel-arm64	OK	99
windows-devel	OK	89
windows-release	OK	116
windows-oldrel	OK	71
wasm-release	OK	134

Exports:gaintegerMutation gaintegerOnePointCrossover gaintegerPopulation gaintegerTwoPointCrossover monitorFactory plotTwomodeClustering twomodeClusteringGA twomodeFitnessFactory validateTwomodePartition

Dependencies:cli codetools cpp11 crayon farver foreach GA ggplot2 glue gtable isoband iterators labeling lifecycle R6 RColorBrewer Rcpp RcppArmadillo rlang S7 scales vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert a twomodeClustering object to a data.frame	as.data.frame.twomodeClustering
Integer mutation for genetic algorithm	gaintegerMutation
One-point crossover for genetic algorithm with integer encoding	gaintegerOnePointCrossover
Integer population initialization for genetic algorithm	gaintegerPopulation
Two-point crossover for genetic algorithm with integer encoding	gaintegerTwoPointCrossover
Two mode clustering monitoring function factory for GA progress	monitorFactory
Plot two-mode clustering results (validation-aware, compact labels)	plotTwomodeClustering
Print method for summary.twomodeClustering objects	print.summary.twomodeClustering
Print method for twomodeClustering objects	print.twomodeClustering
Summary method for twomodeClustering objects	summary.twomodeClustering
Two-mode clustering using genetic algorithm (with optional validation)	twomodeClusteringGA
Two-mode clustering genetic algorithm evaluation function (fast, robust)	twomodeFitnessFactory
Toy matrix with one multiplicative and one additive bicluster	twomodeToy
Validate a two-mode clustering partition by global and per-block significance	validateTwomodePartition